Precision Meets Complexity: Navigating Regulatory Challenges In Oligonucleotide Therapeutics
By Kaitlyn Rouillard Vargas, PhD, Scientist, Product Development & Commercialization, Kymanox Corporation, Morrisville, North Carolina

Oligonucleotide therapies, including antisense oligonucleotides (ASOs) and small interfering RNAs (siRNAs), represent groundbreaking advancements in modern drug development. These therapies target genetic material at the mRNA level, offering the ability to treat conditions once considered untreatable. With 13 FDA-approved ASOs, these therapies are versatile, offering mechanisms like gene silencing and splice modulation to address diseases ranging from rare genetic disorders to common chronic conditions.
Despite their potential, the development of oligonucleotide therapies presents regulatory challenges, particularly in the U.S. and Europe. The U.S. FDA evaluates synthetic oligonucleotides as chemical drugs under CDER, while gene therapies are regulated by CBER. Europe classifies synthetic oligonucleotides as new chemical entities (NCEs) and requires additional regulation for gene therapies. Harmonizing regulatory strategies across jurisdictions is critical for efficient global development.
Early and frequent engagement with the FDA is essential for overcoming challenges such as pharmacokinetics, immunogenicity, and impurity characterization. FDA consultations help drug developers align their studies with regulatory expectations and take advantage of expedited approval pathways, like fast track and orphan drug designations, which can shorten time to market. However, oligonucleotide therapies require thorough safety assessments, particularly regarding immunogenicity and long-term tissue effects.
To succeed, developers must adopt proactive strategies, including early planning and expert regulatory guidance. With the right approach, oligonucleotide therapies can revolutionize treatment for rare and complex diseases, offering hope to patients with unmet medical needs.
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